PHF21A gene

PHD finger protein 21A

The PHF21A gene (also known as BHC80) provides instructions for making a protein involved in a process called histone demethylation, which helps control (regulate) gene activity. Histones are structural proteins that attach (bind) to DNA and give chromosomes their shape. The removal of a molecule called a methyl group from histones (histone demethylation), helps turn off (repress) certain genes. The PHF21A protein binds to histones that have already been demethylated, which researchers speculate helps keep the histone demethylated and the genes turned off. The PHF21A protein appears to be particularly important in regulating genes involved in development of nerve cells in the brain and structures of the face.

A genetic change resulting in the deletion of the PHF21A gene causes a condition called Potocki-Shaffer syndrome. People with this condition have enlarged openings in two bones that make up much of the top and sides of the skull (enlarged parietal foramina) and multiple noncancerous bone tumors (osteochondromas). Other signs and symptoms seen in some people with Potocki-Shaffer syndrome include intellectual disability, developmental delay, distinctive facial features, vision problems, and defects in the heart, kidneys, and urinary tract.

Potocki-Shaffer syndrome (also called proximal 11p deletion syndrome) is caused by a deletion of genetic material from the short (p) arm of chromosome 11. In people with this condition, a loss of the PHF21A gene within this region is responsible for intellectual disability and distinctive facial features. The deletion likely leads to a reduction in the amount of PHF21A protein. It is thought that the resulting disruption of histone demethylation alters the activity of genes involved in neuronal and facial development, leading to intellectual disability and distinctive facial features. The loss of other genes in the same region of chromosome 11, ALX4 and EXT2, underlie the enlarged parietal foramina and multiple osteochondromas, respectively. The loss of additional genes in the deleted region likely contributes to the other features of Potocki-Shaffer syndrome.

Cytogenetic Location: 11p11.2, which is the short (p) arm of chromosome 11 at position 11.2

Molecular Location: base pairs 45,929,319 to 46,121,454 on chromosome 11 (Homo sapiens Updated Annotation Release 109.20200522, GRCh38.p13) (NCBI)

Cytogenetic Location: 11p11.2, which is the short (p) arm of chromosome 11 at position 11.2
  • BHC80
  • BHC80a
  • BM-006
  • BRAF35-HDAC complex protein BHC80
  • BRAF35/HDAC2 complex (80 kDa)
  • KIAA1696